Papers

Structural basis of sarco/endoplasmic reticulum Ca2+-ATPase 2b regulation via transmembrane helix interplay
Michio Inoue, Nanami Sakuta, Satoshi Watanabe, Yuxia Zhang, Kunihito Yoshikaie, Yoshiki Tanaka, Ryo Ushioda, Yukinari Kato, Junichi Takagi, Tomoya Tsukazaki, Kazuhiro Nagata, Kenji Inaba
Cell Reports 27, 4, 1221-1230 (2019)

Ryo Ushioda
and Kazuhiro Nagata
Redox-Mediate Regulatory Mechanisms of Endoplasmic Reticulum Homeostasis
Cold Spring Harbor Perspectives in Biology: In Press

Sasikumar, P., AlOuda, K. S., Kaiser, W. J., Holbrook, L. M., Kriek, N.,Unsworth, A. J., Bye, A. P., Sage, T., 〇Ushioda, R., Nagata, K., Farndale, R. W., and Gibbins, J. M. 
 The chaperone protein HSP47: a platelet collagen binding protein that contributes to thrombosis and hemostasis.
Journal of thrombosis and hemostasis: JTH 16, 946-959, (2018) 

Caba, C., Ali Khan, H., Auld, J., 〇Ushioda, R., Araki, K., Nagata, K., and Mutus, B. (2018)
Conserved Residues Lys(57) and Lys(401) of Protein Disulfide Isomerase Maintain an Active Site Conformation for Optimal Activity: Implications for Post-Translational Regulation.
Frontiers in molecular biosciences 5, 18 (2018) 

Maegawa, K., Watanabe, S., Noi, K., Okumura, M., Amagai, Y., Inoue, M., Ushioda, R., Nagata, K., Ogura, T. and Inaba, K.*
The highly dynamic nature of ERdj5 is key to efficient elimination of aberrant protein oligomers through ER-associated degradation
Structure, 25:846-857 (2017)

Araki K*, Ushioda R, Kusano H, Tanaka R, Hatta T, Fukui K, Nagata K, Natsume T
A crosslinker-based identification of redox relay targets
Anal. Biochem. 1;520:22-26. (2017)

R. Ushioda, A. Miyamoto, M. Inoue, S. Watanabe, M. Okumura, K. Maegawa, K. Uegaki, S. Fujii, Y. Fukuda, M. Umitsu, J. Takagi, K. Inaba, K. Mikoshibad, and K. Nagata*
Redox-assisted regulation of Ca2+ homeostasis in the endoplasmic reticulum by disulfide reductase ERdj5
Proc Natl Acad Sci U S A. Oct 11;113(41): E6055-E6063(2016)


D.J. Klionsky*, K.Nagata, R.Ushioda et al.
Guidelines for the use and interpretation of assays for monitoring autophagy
Autophagy, 12(1): 1-222 (2016)

Kawasaki K, Ushioda R*, Ito S, Ikeda K, Masago Y, Nagata K*
Deletion of the Collagen-specific Molecular Chaperone Hsp47 Causes Endoplasmic Reticulum Stress-mediated Apoptosis of Hepatic Stellate Cells.

J Biol Chem. 290. 3639-3646 (2015)

Avezov E, Konno T, Zyryanova A, Chen W, Laine R, Crespillo-Casado A, Melo E, Ushioda R, Nagata K, Kaminski CF, Harding HP, Ron D*.
Retarded PDI diffusion and a reductive shift in poise of the calcium depleted endoplasmic reticulum 
BMC Biol. 10;13(1):2(2015)
 
R. Ushioda, J. Hoseki, K. Nagata*.
Glycosylation-independent ERAD patway serves as a backup system under ER stress.
Mol Biol Cell. 24(20):3155-63 (2013)

R. Ushioda and K. Nagata*.
The endoplasmic reticulum-associated degradation and disulfide reductase ERdj5.
Methods Enzymol. 490:235-58 (2011)

M. Hagiwara, K. Maegawa, M. Suzuki, R. Ushioda, K. Araki, Y. Matsumoto, J. Hoseki, K. Nagata* and K. Inaba*
Structural basis of an ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5.
Mol Cell. 41(4):432-444(2011) 

J. Hoseki, R. Ushioda and K. Nagata*.
Mechanism and components of endoplasmic reticulum-associated degradation.
Journal of Biochemistry 147(1):19-25(2010)

R.Ushioda, J.Hoseki, K.araki, G.Jansen , D.Y.Thomas, & K.Nagata*
ERdj5 is required as a disulfide reductase for degradation of misfolded proteins in the ER.
Science 321 (5888):569-72(2008)

FACULTY OF 1000 BIOLOGY Must Read
ACS CHEMICAL BIOLOGY Spotlight(ACS CHEMICAL BIOLOGY vol.3 no.9 522-523, 2008)